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Journal Article

ReDU: a framework to find and reanalyze public mass spectrometry data

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Menezes, Riya Christina
Research Group Mass Spectrometry, MPI for Chemical Ecology, Max Planck Society;

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Citation

Jarmusch, A. K., Wang, M., Aceves, C. M., Advani, R. S., Aguire, S., Aksenov, A. A., et al. (2020). ReDU: a framework to find and reanalyze public mass spectrometry data. Nature Methods, 17, 901-904. doi:10.1038/s41592-020-0916-7.

Abstract

Metabolomics data are difficult to find and reuse, even in public repositories. We, therefore, developed the Reanalysis of Data User (ReDU) interface (https://redu.ucsd.edu/), a community- and data-driven approach that solves this problem at the repository scale. ReDU enables public data discovery and co- or re-analysis via uniformly formatted, publicly available MS/MS data and metadata in the Global Natural Product Social Molecular Networking Platform (GNPS), consistent with findable, accessible, interoperable, and reusable (FAIR) principles.