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Insight into nuclear body formation of phytochromes through stochastic modelling and experiment

MPG-Autoren
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Sonntag,  Sebastian
Emmy Noether Junior Research Group Forest Management in the Earth System, The Land in the Earth System, MPI for Meteorology, Max Planck Society;

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Grima_2018_Phys._Biol._15_056003.pdf
(Verlagsversion), 915KB

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Grima, R., Sonntag, S., Venezia, F., Kircher, S., Smith, R. W., & Fleck, C. (2018). Insight into nuclear body formation of phytochromes through stochastic modelling and experiment. Physical Biology, 15: 056003. doi:10.1088/1478-3975/aac193.


Zitierlink: https://hdl.handle.net/21.11116/0000-0001-671C-D
Zusammenfassung
Spatial relocalization of proteins is crucial for the correct functioning of living cells. An interesting example of spatial ordering is the light-induced clustering of plant photoreceptor proteins. Upon irradiation by white or red light, the red light-active phytochrome, phytochrome B, enters the nucleus and accumulates in large nuclear bodies (NBs). The underlying physical process of nuclear body formation remains unclear, but phytochrome B is thought to coagulate via a simple protein–protein binding process. We measure, for the first time, the distribution of the number of phytochrome B-containing NBs as well as their volume distribution. We show that the experimental data cannot be explained by a stochastic model of nuclear body formation via simple protein–protein binding processes using physically meaningful parameter values. Rather modelling suggests that the data is consistent with a two step process: a fast nucleation step leading to macroparticles followed by a subsequent slow step in which the macroparticles bind to form the nuclear body. An alternative explanation for the observed nuclear body distribution is that the phytochromes bind to a so far unknown molecular structure. We believe it is likely this result holds more generally for other nuclear body-forming plant photoreceptors and proteins.