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Abstract

To quantify the effect of salinity stratification on phytoplankton density (denoted as P) patterns, experiments were conducted with an idealised model that couples physical and biological processes. Results show that the idealised model is capable of capturing the main features of observed P patterns in the Columbia River estuary during the spring season: during weak stratification, P is almost vertically uniform with values decreasing towards the estuary mouth, whereas during strong stratification, high values of P extend further seawards but are confined to the upper layer. Sensitivity studies reveal that the strong vertical gradients of P can only occur if the intensity of turbulence (measured by depth-averaged values of vertical eddy viscosity and eddy diffusivity) is weak. The advection of P by subtidal currents is important in obtaining a smaller along-estuary gradient of P during weak stratification and in obtaining a smaller horizontal gradient and a larger vertical gradient of P during strong stratification. Accounting for stratification controlled vertical distribution of vertical eddy viscosity and eddy diffusivity is necessary for obtaining realistic P patterns if stratification is strong, but not if stratification is weak. A higher osmotic stress, which leads to faster loss of phytoplankton in salt water, results in a larger along-estuary gradient of P if stratification is weak and in a larger vertical gradient of P if stratification is strong.