Genomic resources for wild populations of the house mouse, Mus musculus and its 
close relative Mus spretus

Harr, Bettina; Karakoc, Emre; Neme, Rafik; Teschke, Meike; Pfeifle, Christine; Pezer, Zeljka; Babiker, Hiba; Linnenbrink, Miriam; Montero, Inka; Scavetta, Rick; Abai, M.R.; Molins, M.P.; Schlegel, M.; Ulrich, R.G.; Altmüller, J.; Franitza, M.; Büntge, Anna; Künzel, Sven; Tautz, Diethard

doi:10.1038/sdata.2016.75

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Journal Article

Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus

MPS-Authors

/persons/resource/persons56714

Harr, Bettina
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons138350

Karakoc, Emre
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons73199

Neme, Rafik
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons56966

Teschke, Meike
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons132041

Pfeifle, Christine
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons204822

Pezer, Zeljka
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons61098

Babiker, Hiba
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons82472

Linnenbrink, Miriam
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons56832

Montero, Inka
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons56901

Scavetta, Rick
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons56616

Büntge, Anna
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons56786

Künzel, Sven
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

/persons/resource/persons56962

Tautz, Diethard
Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society;

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https://www.nature.com/articles/sdata201675
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sdata201675 (2).pdf
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Citation

Harr, B., Karakoc, E., Neme, R., Teschke, M., Pfeifle, C., Pezer, Z., et al. (2016). Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Scientific Data, 3: 160075. doi:10.1038/sdata.2016.75.

Cite as: https://hdl.handle.net/11858/00-001M-0000-002C-3AE2-C

Abstract

Wild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory. © The Author(s) 2016.