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#### Rotations of periodic strings and short superstrings

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##### Fulltext (public)

1996-1-019

(Any fulltext), 11KB

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##### Citation

Breslauer, D., Jiang, T., & Jiang, Z.(1996). *Rotations
of periodic strings and short superstrings* (MPI-I-1996-1-019). Saarbrücken: Max-Planck-Institut für Informatik.

Cite as: http://hdl.handle.net/11858/00-001M-0000-0014-A17F-5

##### Abstract

This paper presents two simple approximation algorithms for the shortest superstring problem, with approximation ratios $2 {2\over 3}$ ($\approx 2.67$) and $2 {25\over 42}$ ($\approx 2.596$), improving the best previously published $2 {3\over 4}$ approximation.
The framework of our improved algorithms is similar to that of previous algorithms in the sense that they construct a superstring by computing some optimal cycle covers on the distance graph of the given strings, and then break and merge the cycles to finally obtain
a Hamiltonian path, but we make use of new bounds on the overlap between two strings.
We prove that for each periodic semi-infinite string $\alpha = a_1 a_2 \cdots$ of period $q$, there exists an integer $k$, such that for {\em any} (finite) string $s$ of period $p$ which is {\em inequivalent} to $\alpha$, the overlap between $s$ and the {\em rotation}
$\alpha[k] = a_k a_{k+1} \cdots$ is at most $p+{1\over 2}q$.
Moreover, if $p \leq q$, then the overlap between $s$ and $\alpha[k]$ is not larger than ${2\over 3}(p+q)$. In the previous shortest superstring algorithms $p+q$ was used as the standard bound on overlap between two strings with periods $p$ and $q$.