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Conference Paper

Modelling biological networks by action languages via answer set programming

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http://pubman.mpdl.mpg.de/cone/persons/resource/persons97409

Selbig,  J.
BioinformaticsCRG, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society;

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Citation

Grell, S., Schaub, T., & Selbig, J. (2006). Modelling biological networks by action languages via answer set programming. In Twenty Second International Conference on Logic Programming (ICLP) (pp. 285-299). Springer, Heidelberg, Berlin.


Cite as: http://hdl.handle.net/11858/00-001M-0000-0014-2A81-A
Abstract
We describe an approach to modelling biological networks by action languages via answer set programming. To this end, we propose an action language for modelling biological networks, building on previous work by Baral et al. We introduce its syntax and semantics along with a translation into answer set programming. Finally, we describe one of its applications, namely, the sulfur starvation response-pathway of the model plant Arabidopsis thaliana and sketch the functionality of our system and its usage.