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Evaluating SKI as a candidate gene for non-syndromic cleft lip with or without cleft palate

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http://pubman.mpdl.mpg.de/cone/persons/resource/persons71425

Wienker,  T. F.
Clinical Genetics (Thomas F. Wienker), Dept. of Human Molecular Genetics (Head: Hans-Hilger Ropers), Max Planck Institute for Molecular Genetics, Max Planck Society;
Institute for Medical Biometry, Informatics and Epidemiology, University of Bonn;

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Mangold.pdf
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Citation

Mangold, E., Reutter, H., Leon-Cachon, R. B., Ludwig, K. U., Herms, S., Chacon-Camacho, O., et al. (2012). Evaluating SKI as a candidate gene for non-syndromic cleft lip with or without cleft palate. European Journal of Oral Science, 120(5), 373-377. doi:10.1111/j.1600-0722.2012.00991.x.


Cite as: http://hdl.handle.net/11858/00-001M-0000-000E-EC78-2
Abstract
Non-syndromic cleft lip with or without cleft palate (NSCL/P) is one of the most common of all congenital malformations and has a multifactorial etiology. Findings in mice suggest that the v-ski sarcoma viral oncogene homolog (SKI) gene is a candidate gene for orofacial clefting. In humans, a significant association between rs2843159 within SKI and NSCL/P has been reported in patients from the Philippines and South America. In the South American patients, the association was driven by the subgroup of patients with non-syndromic cleft lip only (NSCLO). Here we investigated the association with rs2843159 in a Mayan Mesoamerican population (172 NSCL/P patients and 366 controls). In addition, we analyzed the phenotypic subgroups NSCLO and non-syndromic cleft of lip and palate (NSCLP). A trend towards association between rs2843159 and NSCL/P was observed in the Mayan cohort (P = 0.097), and we found a stronger association in the NSCLP subgroup (P = 0.072) despite a limited sample size. To investigate whether other common variants within the SKI gene contribute to NSCL/P susceptibility in European and Asian populations, we also analyzed genotypic data from two recent genome-wide association studies using set-based statistical approaches. These analyses detected a trend toward association in the European population. Our data provide limited support for the hypothesis that common SKI variants are susceptibility factors for NSCL/P.