de.mpg.escidoc.pubman.appbase.FacesBean
English
 
Help Guide Disclaimer Contact us Login
  Advanced SearchBrowse

Item

ITEM ACTIONSEXPORT

Released

Journal Article

Web-based digital gene expression atlases for the mouse

MPS-Authors
http://pubman.mpdl.mpg.de/cone/persons/resource/persons15110

Geffers,  Lars
Department of Genes and Behavior, MPI for biophysical chemistry, Max Planck Society;

http://pubman.mpdl.mpg.de/cone/persons/resource/persons50201

Herrmann,  Bernhard G.
Dept. of Developmental Genetics (Head: Bernhard G. Herrmann), Max Planck Institute for Molecular Genetics, Max Planck Society;

http://pubman.mpdl.mpg.de/cone/persons/resource/persons15030

Eichele,  Gregor
Department of Genes and Behavior, MPI for biophysical chemistry, Max Planck Society;

Locator
There are no locators available
Fulltext (public)

Geffers.pdf
(Publisher version), 2MB

Supplementary Material (public)
There is no public supplementary material available
Citation

Geffers, L., Herrmann, B. G., & Eichele, G. (2012). Web-based digital gene expression atlases for the mouse. Mammalian Genome, 23, 525-538. doi:10.1007/s00335-012-9413-3.


Cite as: http://hdl.handle.net/11858/00-001M-0000-000E-BA72-2
Abstract
Over the past 15 years the publicly available mouse gene expression data determined by in situ hybridization have dramatically increased in scope and spatiotemporal resolution. As a consequence of resources and tools available in the post-genomic era, full transcriptomes in the mouse brain and in the mouse embryo can be studied. Here we introduce and discuss seven current databases (MAMEP, EMBRYS, GenePaint, EURExpress, EuReGene, BGEM, and GENSAT) that grant access to large collections of expression data in mouse. We review the experimental focus, coverage, data assessment, and annotation for each of these databases and the implementation of analytic tools and links to other relevant databases. We provide a user-oriented summary of how to interrogate each database.