de.mpg.escidoc.pubman.appbase.FacesBean
English
 
Help Guide Privacy Policy Disclaimer Contact us
  Advanced SearchBrowse

Item

ITEM ACTIONSEXPORT

Released

Journal Article

New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses.

MPS-Authors
http://pubman.mpdl.mpg.de/cone/persons/resource/persons50488

Reinhardt,  Richard
High Throughput Technologies, Max Planck Institute for Molecular Genetics, Max Planck Society;

Locator
There are no locators available
Fulltext (public)
There are no public fulltexts available
Supplementary Material (public)
There is no public supplementary material available
Citation

Rohde, C., Zhang, Y., Stamerjohanns, H., Hecher, K., Reinhardt, R., & Jeltsch, A. (2009). New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses. BioTechniques, 47(3), 781-783. doi:10.2144/000113196.


Cite as: http://hdl.handle.net/11858/00-001M-0000-0010-7D1A-0
Abstract
The Bisulfite Sequencing Data Presentation and Compilation (BDPC) web interface for compilation and presentation of data from bisulfite sequencing DNA methylation studies has been improved by adding a new module. This module allows visualization of the whole data set in form of a heatmap of DNA methylation levels and clustering and comparison of tissue methylation patterns. It can also be used for data not processed by BDPC. In addition, several functions of the existing BDPC compilation module have been improved.