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  Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategies

Poltz, R., Franke, R., Schweitzer, K., Klamt, S., Gilles, E. D., & Naumann, M. (2009). Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategies. Advances and Applications in Bioinformatics and Chemistry, 2, 125-138. doi:10.2147/AABC.S8211.

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443825_adv_appl_bio_chem.pdf (Publisher version), 3MB
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© 2009 Poltz et al, publisher and licensee Dove Medical Press Ltd. This is an Open Access article which permits unrestricted noncommercial use, provided the original work is properly cited.

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Poltz, R.1, Author
Franke, R.1, Author
Schweitzer, K.1, Author
Klamt, S.2, Author           
Gilles, E. D.3, Author           
Naumann, M.1, Author
Affiliations:
1Otto von Guericke UniversityInstitute of Experimental Internal MedicineMagdeburg, ou_persistent22              
2Analysis and Redesign of Biological Networks, Max Planck Institute for Dynamics of Complex Technical Systems, Max Planck Society, ou_1738139              
3Systems Biology, Max Planck Institute for Dynamics of Complex Technical Systems, Max Planck Society, ou_1738155              

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 Abstract: Genotoxic stress is induced by a broad range of DNA-damaging agents and could lead to a variety of human diseases including cancer. DNA damage is also therapeutically induced for cancer treatment with the aim to eliminate tumor cells. However, the effectiveness of radio- and chemotherapy is strongly hampered by tumor cell resistance. A major reason for radio- and chemotherapeutic resistances is the simultaneous activation of cell survival pathways resulting in the activation of the transcription factor nuclear factor-kappa B (NF-κB). Here, we present a Boolean network model of the NF-κB signal transduction induced by genotoxic stress in epithelial cells. For the representation and analysis of the model, we used the formalism of logical interaction hypergraphs. Model reconstruction was based on a careful meta-analysis of published data. By calculating minimal intervention sets, we identified p53-induced protein with a death domain (PIDD), receptor-interacting protein 1 (RIP1), and protein inhibitor of activated STAT y (PIASy) as putative therapeutic targets to abrogate NF-κB activation resulting in apoptosis. Targeting these structures therapeutically may potentiate the effectiveness of radio- and chemotherapy. Thus, the presented model allows a better understanding of the signal transduction in tumor cells and provides candidates as new therapeutic target structures. © 2009 Poltz et al, publisher and licensee Dove Medical Press Ltd. This is an Open Access article which permits unrestricted noncommercial use, provided the original work is properly cited. [accessed February 5th, 2010]

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Language(s): eng - English
 Dates: 2009
 Publication Status: Issued
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 Rev. Type: Peer
 Identifiers: eDoc: 443825
DOI: 10.2147/AABC.S8211
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Title: Advances and Applications in Bioinformatics and Chemistry
Source Genre: Journal
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Pages: - Volume / Issue: 2 Sequence Number: - Start / End Page: 125 - 138 Identifier: -