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  Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes

Beliveau, B. J., Boettiger, A. N., Avendano, M. S., Jungmann, R., McCole, R. B., Joyce, E. F., et al. (2015). Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes. NATURE COMMUNICATIONS, 6: 7147. doi:10.1038/ncomms8147.

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 Urheber:
Beliveau, Brian J.1, Autor
Boettiger, Alistair N.1, Autor
Avendano, Maier S.1, Autor
Jungmann, Ralf2, Autor           
McCole, Ruth B.1, Autor
Joyce, Eric F.1, Autor
Kim-Kiselak, Caroline1, Autor
Bantignies, Frederic1, Autor
Fonseka, Chamith Y.1, Autor
Erceg, Jelena1, Autor
Hannan, Mohammed A.1, Autor
Hoang, Hien G.1, Autor
Colognori, David1, Autor
Lee, Jeannie T.1, Autor
Shih, William M.1, Autor
Yin, Peng1, Autor
Zhuang, Xiaowei1, Autor
Wu, Chao-ting1, Autor
Affiliations:
1external, ou_persistent22              
2Jungmann, Ralf / Molecular Imaging and Bionanotechnology, Max Planck Institute of Biochemistry, Max Planck Society, ou_2149679              

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Schlagwörter: STRUCTURED-ILLUMINATION MICROSCOPY; ALLELE-SPECIFIC DETECTION; OLIGONUCLEOTIDE PROBES; NUCLEAR ARCHITECTURE; BITHORAX COMPLEX; PADLOCK PROBES; REVEALS; HYBRIDIZATION; RESOLUTION; DYNAMICS
 Zusammenfassung: Fluorescence in situ hybridization (FISH) is a powerful single-cell technique for studying nuclear structure and organization. Here we report two advances in FISH-based imaging. We first describe the in situ visualization of single-copy regions of the genome using two single-molecule super-resolution methodologies. We then introduce a robust and reliable system that harnesses single-nucleotide polymorphisms (SNPs) to visually distinguish the maternal and paternal homologous chromosomes in mammalian and insect systems. Both of these new technologies are enabled by renewable, bioinformatically designed, oligonucleotide-based Oligopaint probes, which we augment with a strategy that uses secondary oligonucleotides (oligos) to produce and enhance fluorescent signals. These advances should substantially expand the capability to query parent-of-origin-specific chromosome positioning and gene expression on a cell-by-cell basis.

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Sprache(n): eng - English
 Datum: 2015
 Publikationsstatus: Online veröffentlicht
 Seiten: 13
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: ISI: 000355533700006
DOI: 10.1038/ncomms8147
 Art des Abschluß: -

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Titel: NATURE COMMUNICATIONS
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND : NATURE PUBLISHING GROUP
Seiten: - Band / Heft: 6 Artikelnummer: 7147 Start- / Endseite: - Identifikator: ISSN: 2041-1723