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  EpiExplorer: Live Exploration and Global Analysis of Large Epigenomic Datasets

Halachev, K., Bast, H., Albrecht, F., Lengauer, T., & Bock, C. (2012). EpiExplorer: Live Exploration and Global Analysis of Large Epigenomic Datasets. Genome Biology, 13(10): R96, pp. 1-14. doi:10.1186/gb-2012-13-10-r96.

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Item Permalink: https://hdl.handle.net/11858/00-001M-0000-0014-C951-3 Version Permalink: https://hdl.handle.net/11858/00-001M-0000-0019-BB9D-F
Genre: Journal Article
Latex : {EpiExplorer}: {Live} Exploration and Global Analysis of Large Epigenomic Datasets

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© 2012 Halachev et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited
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http://creativecommons.org/licenses/by/2.0

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 Creators:
Halachev, Konstantin1, Author           
Bast, Hannah2, Author           
Albrecht, Felipe1, Author
Lengauer, Thomas1, Author           
Bock, Christoph1, Author           
Affiliations:
1Computational Biology and Applied Algorithmics, MPI for Informatics, Max Planck Society, ou_40046              
2External Organizations, ou_persistent22              

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 Abstract: ABSTRACT: Epigenome mapping consortia are generating resources of tremendous value for studying epigenetic regulation. To maximize their utility and impact, new tools are needed that facilitate interactive analysis of epigenome datasets. Here we describe EpiExplorer, a web tool for exploring genome and epigenome data on a genomic scale. We demonstrate EpiExplorer's utility by describing a hypothesis-generating analysis of DNA hydroxymethylation in relation to public reference maps of the human epigenome. All EpiExplorer analyses are performed dynamically within seconds, using an efficient and versatile text indexing scheme that we introduce to bioinformatics. EpiExplorer is available at http://epiexplorer.mpi-inf.mpg.de.

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Language(s): eng - English
 Dates: 2012
 Publication Status: Published online
 Pages: -
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 Table of Contents: -
 Rev. Type: -
 Identifiers: PMID: 23034089
DOI: 10.1186/gb-2012-13-10-r96
URI: http://www.ncbi.nlm.nih.gov/pubmed/23034089
BibTex Citekey: BockLengauer2012a
Other: Local-ID: 15A6C3BF892187C2C1257AED003FCD73-BockLengauer2012a
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Title: Genome Biology
Source Genre: Journal
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Publ. Info: London : BioMed Central Ltd.
Pages: - Volume / Issue: 13 (10) Sequence Number: R96 Start / End Page: 1 - 14 Identifier: ISSN: 1465-6906
CoNE: https://pure.mpg.de/cone/journals/resource/1000000000224390_1