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  New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses.

Rohde, C., Zhang, Y., Stamerjohanns, H., Hecher, K., Reinhardt, R., & Jeltsch, A. (2009). New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses. BioTechniques, 47(3), 781-783. doi:10.2144/000113196.

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Item Permalink: https://hdl.handle.net/11858/00-001M-0000-0010-7D1A-0 Version Permalink: https://hdl.handle.net/11858/00-001M-0000-0010-7D1B-E
Genre: Journal Article
Alternative Title : Biotechniques

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781.pdf (Any fulltext), 2MB
 
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eDoc_access: INSTITUT
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 Creators:
Rohde, Christian, Author
Zhang, Yingying, Author
Stamerjohanns, Heinrich, Author
Hecher, Kurt, Author
Reinhardt, Richard1, Author           
Jeltsch, Albert, Author
Affiliations:
1High Throughput Technologies, Max Planck Institute for Molecular Genetics, Max Planck Society, ou_1433552              

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Free keywords: DNA methylation; epigenetics; bisulfite analysis; methylome; epigenome; BiQ Analyzer
 Abstract: The Bisulfite Sequencing Data Presentation and Compilation (BDPC) web interface for compilation and presentation of data from bisulfite sequencing DNA methylation studies has been improved by adding a new module. This module allows visualization of the whole data set in form of a heatmap of DNA methylation levels and clustering and comparison of tissue methylation patterns. It can also be used for data not processed by BDPC. In addition, several functions of the existing BDPC compilation module have been improved.

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Language(s): eng - English
 Dates: 2009-09-01
 Publication Status: Issued
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: -
 Identifiers: eDoc: 461005
URI: http://www.biotechniques.com/BiotechniquesJournal/2009/September/New-clustering-module-in-BDPC-bisulfite-sequencing-data-presentation-and-compilation-web-application-for-DNA-methylation-analyses/biotechniques-173804.html
DOI: 10.2144/000113196
 Degree: -

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Title: BioTechniques
  Alternative Title : Biotechniques
Source Genre: Journal
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Publ. Info: -
Pages: - Volume / Issue: 47 (3) Sequence Number: - Start / End Page: 781 - 783 Identifier: ISSN: 0736-6205