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  Heritable individual-specific and allele-specific chromatin signatures in humans

McDaniell, R., Lee, B.-K., Song, L., Liu, Z., Boyle, A. P., Erdos, M. R., et al. (2010). Heritable individual-specific and allele-specific chromatin signatures in humans. Science, 328(5975), 235-239. doi:10.1126/science.1184655.

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McDaniell_et_al_Science_2010.pdf (Publisher version), 680KB
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This supplement contains: Materials and Methods Figs. S1 to S11 Tables S1 to S5 References
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 Creators:
McDaniell, Ryan1, Author
Lee, Bum-Kyu1, Author
Song, Lingyun2, 3, Author
Liu, Zheng1, Author
Boyle, Alan P.2, Author
Erdos, Michael R.4, Author
Scott, Laura J.4, 5, Author
Morken, Mario A.4, Author
Kucera, Katerina S.2, Author           
Battenhouse, Anna1, Author
Keefe, Damian6, Author
Collins, Francis S.4, Author
Willard, Huntington F.2, Author
Lieb, Jason D.7, Author
Furey, Terrence S.2, Author
Crawford, Gregory E.2, 3, Author
Iyer, Vishwanath R.7, Author
Birney, Ewan6, Author
Affiliations:
1Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, Section of Molecular Genetics and Microbiology, University of Texas, Austin, TX, ou_persistent22              
2Institute for Genome Sciences and Policy (IGSP), Duke University, Durham, NC, ou_persistent22              
3Department of Pediatrics, Division of Medical Genetics, Duke University, Durham, NC, ou_persistent22              
4Genome Technology Branch, National Human Genome Research Institute, Bethesda, MD, ou_persistent22              
5Center for Statistical Genetics, Department of Biostatistics, University of Michigan, Ann Arbor, MI, ou_persistent22              
6European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, ou_persistent22              
7Department of Biology, Carolina Center for Genome Sciences, and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, ou_persistent22              

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 Abstract: The extent to which variation in chromatin structure and transcription factor binding may influence gene expression, and thus underlie or contribute to variation in phenotype, is unknown. To address this question, we cataloged both individual-to-individual variation and differences between homologous chromosomes within the same individual (allele-specific variation) in chromatin structure and transcription factor binding in lymphoblastoid cells derived from individuals of geographically diverse ancestry. Ten percent of active chromatin sites were individual-specific; a similar proportion were allele-specific. Both individual-specific and allele-specific sites were commonly transmitted from parent to child, which suggests that they are heritable features of the human genome. Our study shows that heritable chromatin status and transcription factor binding differ as a result of genetic variation and may underlie phenotypic variation in humans.

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Language(s): eng - English
 Dates: 2010
 Publication Status: Issued
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1126/science.1184655
PMC: PMC2929018
PMID: 20299549
 Degree: -

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Title: Science
Source Genre: Journal
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Publ. Info: Washington, D.C. : American Association for the Advancement of Scienc
Pages: - Volume / Issue: 328 (5975) Sequence Number: - Start / End Page: 235 - 239 Identifier: ISSN: 0036-8075
CoNE: https://pure.mpg.de/cone/journals/resource/991042748276600_1