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  Mapping and classifying molecules from a high-throughput structural database

De, S., Musil, F., Ingram, T., Baldauf, C., & Ceriotti, M. (2017). Mapping and classifying molecules from a high-throughput structural database. Journal of Cheminformatics, 9: 6. doi:10.1186/s13321-017-0192-4.

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art_10.1186_s13321-017-0192-4.pdf (Verlagsversion), 16MB
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 Urheber:
De, Sandip1, 2, Autor
Musil, Felix1, 2, Autor
Ingram, Teresa3, Autor           
Baldauf, Carsten3, Autor           
Ceriotti, Michele1, 2, Autor
Affiliations:
1National Center for Computational Design and Discovery of Novel Materials (MARVEL), Lausanne, Switzerland, ou_persistent22              
2Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland, ou_persistent22              
3Theory, Fritz Haber Institute, Max Planck Society, ou_634547              

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 Zusammenfassung: High-throughput computational materials design promises to greatly accelerate the process of discovering new materials and compounds, and of optimizing their properties. The large databases of structures and properties that result from computational searches, as well as the agglomeration of data of heterogeneous provenance leads to considerable challenges when it comes to navigating the database, representing its structure at a glance, understanding structure–property relations, eliminating duplicates and identifying inconsistencies. Here we present a case study, based on a data set of conformers of amino acids and dipeptides, of how machine-learning techniques can help addressing these issues. We will exploit a recently-developed strategy to define a metric between structures, and use it as the basis of both clustering and dimensionality reduction techniques—showing how these can help reveal structure–property relations, identify outliers and inconsistent structures, and rationalise how perturbations (e.g. binding of ions to the molecule) affect the stability of different conformers.

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 Datum: 2016-09-292017-01-172017-02-02
 Publikationsstatus: Online veröffentlicht
 Seiten: 14
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1186/s13321-017-0192-4
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Titel: Journal of Cheminformatics
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: BioMed Central
Seiten: 14 Band / Heft: 9 Artikelnummer: 6 Start- / Endseite: - Identifikator: Anderer: 1758-2946
CoNE: https://pure.mpg.de/cone/journals/resource/1758-2946