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  Toward modernizing the systematic review pipeline in genetics: efficient updating via data mining

Wallace, B. C., Small, K., Brodley, C. E., Lau, J., Schmid, C. H., Bertram, L., Lill, C. M., Cohen, J. T., & Trikalinos, T. A. (2012). Toward modernizing the systematic review pipeline in genetics: efficient updating via data mining. GENETICS IN MEDICINE, 14(7), 663-669. doi:10.1038/gim.2012.7.

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資料種別: 学術論文

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Wallace.pdf (出版社版), 364KB
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https://hdl.handle.net/11858/00-001M-0000-000E-F42A-2
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Wallace.pdf
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application/pdf / [MD5]
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© 2012 Nature Publishing Group
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 作成者:
Wallace, B. C., 著者
Small, K., 著者
Brodley, C. E., 著者
Lau, J., 著者
Schmid, C. H., 著者
Bertram, L.1, 著者           
Lill, C. M.1, 2, 著者           
Cohen, J. T., 著者
Trikalinos, T. A., 著者
所属:
1Neuropsychiatric Genetics (Lars Bertram), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society, Berlin, Germany, ou_1479655              
2Department of Neurology, University Medical Center of the Johannes Gutenberg-University, Mainz, Germany, ou_persistent22              

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キーワード: Alzheimer Disease/genetics Cost-Benefit Analysis Data Mining/*methods Databases, Factual Empirical Research Humans Meta-Analysis as Topic Parkinson Disease/genetics Periodicals as Topic *Review Literature as Topic Schizophrenia/genetics Software Technology Assessment, Biomedical
 要旨: PURPOSE: The aim of this study was to demonstrate that modern data mining tools can be used as one step in reducing the labor necessary to produce and maintain systematic reviews. METHODS: We used four continuously updated, manually curated resources that summarize MEDLINE-indexed articles in entire fields using systematic review methods (PDGene, AlzGene, and SzGene for genetic determinants of Parkinson disease, Alzheimer disease, and schizophrenia, respectively; and the Tufts Cost-Effectiveness Analysis (CEA) Registry for cost-effectiveness analyses). In each data set, we trained a classification model on citations screened up until 2009. We then evaluated the ability of the model to classify citations published in 2010 as "relevant" or "irrelevant" using human screening as the gold standard. RESULTS: Classification models did not miss any of the 104, 65, and 179 eligible citations in PDGene, AlzGene, and SzGene, respectively, and missed only 1 of 79 in the CEA Registry (100% sensitivity for the first three and 99% for the fourth). The respective specificities were 90, 93, 90, and 73%. Had the semiautomated system been used in 2010, a human would have needed to read only 605/5,616 citations to update the PDGene registry (11%) and 555/7,298 (8%), 717/5,381 (13%), and 334/1,015 (33%) for the other three databases. CONCLUSION: Data mining methodologies can reduce the burden of updating systematic reviews, without missing more papers than humans.

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言語: eng - English
 日付: 2012-04-052012-07
 出版の状態: 出版
 ページ: -
 出版情報: -
 目次: -
 査読: 査読あり
 識別子(DOI, ISBNなど): DOI: 10.1038/gim.2012.7
 学位: -

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出版物 1

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出版物名: GENETICS IN MEDICINE
  その他 : Genet. Med.
種別: 学術雑誌
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出版社, 出版地: Baltimore, MD : Williams & Wilkins
ページ: - 巻号: 14 (7) 通巻号: - 開始・終了ページ: 663 - 669 識別子(ISBN, ISSN, DOIなど): ISSN: 1098-3600
CoNE: https://pure.mpg.de/cone/journals/resource/954925610933