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  Identification and profiling of miRNAs during herbivory reveals jasmonate-dependent and -independent patterns of accumulation in Nicotiana attenuata

Bozorov, T. A., Baldwin, I. T., & Kim, S.-G. (2012). Identification and profiling of miRNAs during herbivory reveals jasmonate-dependent and -independent patterns of accumulation in Nicotiana attenuata. BMC Plant Biology, 12: 209. doi:10.1186/1471-2229-12-209.

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http://dx.doi.org/10.1186/1471-2229-12-209 (Publisher version)
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 Creators:
Bozorov, Tohir Ahmadovich1, 2, Author           
Baldwin, Ian Thomas1, Author           
Kim, Sang-Gyu1, Author           
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1Department of Molecular Ecology, Prof. I. T. Baldwin, MPI for Chemical Ecology, Max Planck Society, ou_24029              
2IMPRS on Ecological Interactions, MPI for Chemical Ecology, Max Planck Society, Jena, DE, ou_421900              

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 Abstract: Background

Plant microRNAs (miRNAs) play key roles in the transcriptional responses to environmental stresses. However, the role of miRNAs in responses to insect herbivory has not been thoroughly explored. To identify herbivory-responsive miRNAs, we identified conserved miRNAs in the ecological model plant Nicotiana attenuata whose interactions with herbivores have been well-characterized in both laboratory and field studies. Results

We identified 59 miRNAs from 36 families, and two endogenous trans-acting small interfering RNAs (tasiRNA) targeted by miRNAs. We characterized the response of the precursor and mature miRNAs to simulated attack from the specialist herbivore Manduca sexta by quantitative PCR analysis and used ir-aoc RNAi transformants, deficient in jasmonate biosynthesis, to identify jasmonate-dependent and -independent miRNA regulation. Expression analysis revealed that groups of miRNAs and tasiRNAs were specifically regulated by either mechanical wounding or wounding plus oral secretions from M. sexta larvae, and these small RNAs were accumulated in jasmonate-dependent or -independent manners. Moreover, cDNA microarray analysis indicated that the expression patterns of the corresponding target genes were correlated with the accumulation of miRNAs and tasiRNAs.
Conclusions

We show that a group of miRNAs and tasiRNAs orchestrates the expression of target genes involved in N. attenuata’s responses to herbivore attack.

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 Dates: 2012-11-042012-11-07
 Publication Status: Published online
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 Identifiers: Other: ITB402
DOI: 10.1186/1471-2229-12-209
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Title: BMC Plant Biology
Source Genre: Journal
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Publ. Info: BioMed Central
Pages: - Volume / Issue: 12 Sequence Number: 209 Start / End Page: - Identifier: ISSN: 1471-2229
CoNE: https://pure.mpg.de/cone/journals/resource/111032787578000