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  Copy number variants and their role in adaptations in wild populations of Mus musculus domesticus

Nitsche, J. (2010). Copy number variants and their role in adaptations in wild populations of Mus musculus domesticus. Diploma Thesis, Fachhochschule, Bingen.

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Diplomarbeit_19.02.10.pdf (Verlagsversion), 704KB
 
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 Urheber:
Nitsche, Jessica1, Autor           
Krefft, Marianne, Ratgeber
Bryk, Jarek1, Ratgeber           
Affiliations:
1Department Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Max Planck Society, ou_1445635              

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Sprache(n): eng - English
 Datum: 2010-01-31
 Publikationsstatus: Angenommen
 Seiten: 62 Bl.
 Ort, Verlag, Ausgabe: Bingen : Fachhochschule
 Inhaltsverzeichnis: Table of contents
List of Abbreviations...................................................................................................5
List of figures..............................................................................................................6
List of tables...............................................................................................................7
Acknowledgments......................................................................................................8
1. Introduction.............................................................................................................9
1.1 Natural selection and adaptations.....................................................................9
1.2 The worldwide migration of Mus musculus domesticus..................................12
1.3 Copy number variants.....................................................................................14
1.4 Molecular signature of recent positive selection..............................................16
1.5 Microsatellites as markers of genetic variability..............................................17
1.6 Goal and overview of the study.......................................................................19
2. Materials and methods.........................................................................................20
2.1 Materials.........................................................................................................20
2.1.1 Lab equipment..........................................................................................20
2.1.2 Chemicals.................................................................................................21
2.1.3 Programmes.............................................................................................22
2.1.4 Animals.....................................................................................................23
2.2 Methods..........................................................................................................24
2.2.1 DNA isolation and purification..................................................................24
2.2.2 Polymerase chain reaction (PCR)............................................................24
2.2.3 Agarose gel electrophoresis.....................................................................25
2.2.4 Primer design for qPCR............................................................................26
2.2.5 Microsatellite PCR and sequencing..........................................................26
3. Results..................................................................................................................28
3.1 Design of the primers to amplify putative copy-number variable regions........28
3.1 Primer efficiency test.......................................................................................30
3.2 Quantitative PCR............................................................................................34
3.4 Microsatellite scan for selective sweeps.........................................................38
4. Discussion...........................................................................................................41
4.1. Technical issues concerning quantitative PCR assays..................................41
4.2. Results of the quantitative PCR assays.........................................................42
4.3. Results of the microsatellite screen................................................................43
4.4. Future work........................................................................................................44
6. References...........................................................................................................45
7. Attachment...........................................................................................................52
 Art der Begutachtung: -
 Identifikatoren: eDoc: 453067
Anderer: Diss/12200
 Art des Abschluß: Diplom

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