Researcher Portfolio
Kopka, J.
Applied Metabolome Analysis, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society, Applied Metabolome Analysis, Infrastructure Groups and Service Units, Max Planck Institute of Molecular Plant Physiology, Max Planck Society
Researcher Profile
Position: Applied Metabolome Analysis, Infrastructure Groups and Service Units, Max Planck Institute of Molecular Plant Physiology, Max Planck Society
Position: Applied Metabolome Analysis, Department Willmitzer, Max Planck Institute of Molecular Plant Physiology, Max Planck Society
Additional IDs: ORCID:
https://orcid.org/0000-0001-9675-4883
Researcher ID: https://pure.mpg.de/cone/persons/resource/persons97239
Publications
(1 - 25 of 274)
: Murillo, E., Martinez-Seidel, F., Atanasov, K. E., Gentry-Torfer, D., Firmino, A., Augusto, A., Erban, A., Nie, S., Leeming, M. G., Suwanchaikasem, P., Boughton, B. A., Williamson, N. A., Roessner, U., Kopka, J., & Alcázar, R. (2025). Polyamines and flg22 reshape the ribosomal protein composition of actively translating ribosomes in plants. Plant Physiology and Biochemistry, 220: 109585. doi:10.1016/j.plaphy.2025.109585. [PubMan] : Lehr, P., Erban, A., Hartwig, R., Wimmer, M., Kopka, J., & Zörb, C. (2025). Guard Cell-Specific Metabolic Responses to Drought Stress in Maize. Journal of Environmental Quality, 211(2): e70049. [PubMan] : Martinez-Seidel, F., Suwanchaikasem, P., Gentry-Torfer, D., Rajarathinam, Y., Ebert, A., Erban, A., Firmino, A., Nie, S., Leeming, M., Williamson, N., Roessner, U., Kopka, J., & Boughton, B. A. (2025). Remodelled ribosomal populations synthesize a specific proteome in proliferating plant tissue during cold. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 380(1921): 20230384. doi:10.1098/rstb.2023.0384. [PubMan] : Rajarathinam, Y., Wittemeier, L., Gutekunst, K., Hagemann, M., & Kopka, J. (2025). Dynamic photosynthetic labeling and carbon-positional mass spectrometry monitor in vivo Rubisco carbon assimilation rates. Plant Physiology, 197(2): kiaf020. doi:10.1093/plphys/kiaf020. [PubMan] : Lehr, P., Erban, A., Hartwig, R., Wimmer, M., Kopka, J., & Zörb, C. (2024). Grapevine and maize: Two guard cell shaped strategies to cope with repeated drought stress. Plant Physiology and Biochemistry, 217: 109262. doi:10.1016/j.plaphy.2024.109262. [PubMan] : Weiller, F., Diniz, I., Pimentel, D., Erban, A., Reis, P., Soares, F., Rego, C., Kopka, J., & Fortes, A. (2024). Metabolomic analysis of grapes and leaves from symptomatic and asymptomatic Vitis vinifera grapevines with Esca disease. Current Opinion in Plant Biology, 40: 100378. doi:10.1016/j.cpb.2024.100378. [PubMan] : Li, B., Armarego-Marriott, T., Kowalewska, Ł., Thiele, W., Erban, A., Ruf, S., Kopka, J., Schöttler, M. A., & Bock, R. (2024). Membrane protein provision controls prothylakoid biogenesis in tobacco etioplasts. The Plant Cell, 36(12), 4862-4880. doi:10.1093/plcell/koae259. [PubMan] : Ebert, A., Alseekh, S., D´Andrea, L., Roessner, U., Bock, R., & Kopka, J. (2024). Detailed Profiling of 17-Hydroxygeranyllinalool Diterpene Glycosides from Nicotiana Species Reveals Complex Reaction Networks of Conjugation Isomers. Metabolites, 14(10): 562. doi:10.3390/metabo14100562. [PubMan] : Woźniak, N., Sartori, K., Kappel, C., Tran, T., Zhao, L., Erban, A., Gallinger, J., Fehrle, I., Jantzen, F., Orsucci, M., Ninkovic, V., Rosa, S., Lenhard, M., Kopka, J., & Sicard, A. (2024). Convergence and molecular evolution of floral fragrance after independent transitions to self-fertilization. Current Biology, 34(12), 2702-2711.e6. doi:10.1016/j.cub.2024.04.063. [PubMan] : Gentry-Torfer, D., Murillo, E., Barrington, C. L., Nie, S., Leeming, M. G., Suwanchaikasem, P., Williamson, N. A., Roessner, U., Boughton, B. A., Kopka, J., & Martinez-Seidel, F. (2024). Streamlining Protein Fractional Synthesis Rates Using SP3 Beads and Stable Isotope Mass Spectrometry: A Case Study on the Plant Ribosome. Bio-protocol, 14(9): e4981. doi:10.21769/BioProtoc.4981. [PubMan] : Pimentel, D., Amaro, R., Erban, A., Mauri, N., Soares, F., Rego, C., Martıńez-Zapater, J., Mithöfer, A., Kopka, J., & Fortes, A. (2024). Transcriptome, hormonome, and metabolome of susceptible grape berries under powdery mildew infection. In Acta Horticulturae (pp. 1-14). The Hague: International Society for Horticultural Science. doi:10.17660/ActaHortic.2024.1390.1. [PubMan] : Rosa-Téllez, S., Alcántara-Enguídanos, A., Martinez-Seidel, F., Casatejada-Anchel, R., Saeheng, S., Bailes, C. L., Erban, A., Medeiros, D., Alepúz, P., Matus, J. T., Kopka, J., Muñoz-Bertomeu, J., Krueger, S., Roje, S., Fernie, A. R., & Ros, R. (2024). The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant Cell, 36(2): koad256, pp. 404-426. doi:10.1093/plcell/koad256. [PubMan] : Zuther, E., Erban, A., Kopka, J., & Pagter, M. (2024). Different metabolic adaptation strategies after overwintering in Eutrema sp. and Arabidopsis accessions under field conditions in Germany. Physiologia Plantarum, 176(1): e14201. doi:10.1111/ppl.14201. [PubMan] : Daubermann, A. G., Lima, V. F., Erban, A., Kopka, J., Fernie, A. R., Schwarzländer, M., dos Anjos, L., & Daloso, D. M. (2024). Novel guard cell sink characteristics revealed by a multi-species/cell-types meta-analysis of 13C-labelling experiments. Theoretical and Experimental Plant Physiology. doi:10.1007/s40626-023-00299-9. [PubMan] : Schilling, F., Schumacher, C., Koehl, K. I., Sprenger, H., Kopka, J., Peters, R., Haas, M., Zuther, E., & Horn, R. (2024). Whole-genome sequencing of tetraploid potato varieties reveals different strategies for drought tolerance. Scientific Reports, 14(1): 5476. doi:10.1038/s41598-024-55669-3. [PubMan] : Siodmak, A., Martinez-Seidel, F., Rayapuram, N., Bazin, J., Alhoraibi, H., Gentry-Torfer, D., Tabassum, N., Sheikh, A. H., Kise, J., Blilou, I., Crespi, M., Kopka, J., & Hirt, H. (2023). Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research, 51(21), 11876-11892. doi:10.1093/nar/gkad827. [PubMan] : Lima, V., Freire, F., Cândido-Sobrinho, S., Porto, N., Medeiros, D., Erban, A., Kopka, J., Schwarzländer, M., Fernie, A. R., & Daloso, D. (2023). Unveiling the dark side of guard cell metabolism. Plant Physiology and Biochemistry, 201: 107862. doi:10.1016/j.plaphy.2023.107862. [PubMan] : Soltani, F., Nouri, M., Shokrpour, M., Alabboud, M., Erban, A., Fehrle, I., & Kopka, J. (2023). Breeding of Persian melon: Purpose to increase volatile compounds in melon (Cucumis melo) intergroup F1 cross population. Plant Breeding, 142(3), 372-387. doi:10.1111/pbr.13089. [PubMan] : Soares, F., Pimentel, D., Erban, A., Neves, C., Reis, P., Pereira, M., Rego, C., Gama-Carvalho, M., Kopka, J., & Fortes, A. M. (2022). Virulence-related metabolism is activated in Botrytis cinerea mostly in the interaction with tolerant green grapes that remain largely unaffected in contrast with susceptible green grapes. Horticulture Research, 9: uhac217. doi:10.1093/hr/uhac217. [PubMan] : Brigante, F. I., Lucini Mas, A., Erban, A., Fehrle, I., Martinez-Seidel, F., Kopka, J., Wunderlin, D. A., & Baroni, M. V. (2022). Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control, 140: 109114. doi:10.1016/j.foodcont.2022.109114. [PubMan] : Vyse, K., Fischer, A., Zajancauskaite, G., Erban, A., Kopka, J., Balazadeh, S., & Zuther, E. (2022). Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum, 174(4): e13746. doi:10.1111/ppl.13746. [PubMan] : Vyse, K., Schaarschmidt, S., Erban, A., Kopka, J., & Zuther, E. (2022). Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum, 174(4): e13740. doi:10.1111/ppl.13740. [PubMan] : Zhao, Y., Agrawal, N., Ghareeb, H., Habib, M. T., Dickmeis, S., Schwachtje, J., Iven, T. E., Kopka, J., Feussner, I., & Schirawski, J. (2022). The Sporisorium reilianum Effector Vag2 Promotes Head Smut Disease via Suppression of Plant Defense Responses. Journal of Fungi, 8(5): 498. doi:10.3390/jof8050498. [PubMan] : Treves, H., Küken, A., Arrivault, S., Ishihara, H., Hoppe, I., Erban, A., Höhne, M., Moraes, T. A., Kopka, J., Szymanski, J., Nikoloski, Z., & Stitt, M. (2021). Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants, 8, 78-91. doi:10.1038/s41477-021-01042-5. [PubMan] : Martinez-Seidel, F., Hsieh, Y.-C., Walther, D., Kopka, J., & Firmino, A. (2021). COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics, 22: 605. doi:10.1186/s12859-021-04510-z. [PubMan]